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VisProt3DS - 3D Stereo Protein Viewer

VisProt3DS is a stand-alone 3D protein viewer (or visualizer), showing 3D structure of such complex Biological Macromolecules as proteins and DNA (in PDB format) in 3D stereoscopic view by different stereo modes: Anaglyph(color separated), Side by side, Mirror separated and Hardware mode.

View the 3D structure of a protein -

Starting with A PDB CODE (e.g. 1B8G) Go to the Structure Home Page.; Enter the PDB code in the search box and press the Go button. Click a structure image to access its record page

PV - JavaScript Protein Viewer

PV is the default protein-viewer available in SWISS-MODEL. See it in Action. Interested to see what PV can do for you? Then have a look at this simple demo page available here. It's Open Source. The development of PV happens in the open. The complete source code is available on github. Features. PV uses WebGL for rendering.

Vital-IT - DeepView - Swiss-PdbViewer

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts.

Molecule 3D - Molecule Viewer -

To view Molecule 3D on Google Play Market, click here. Molecule 3D can be used in VR glasses. For this you must have two phones(let`s call them Phone1 and Phone2).

10 Free Software for protein 3D structure visualization

10 Free Software for protein 3D structure visualization In some of my previous posts, I was talking about protein 3D structure modelling. I discussed the basics of protein structure and different methods of protein modelling. You can read them here: I. Basic of protein structure and function.


Protein Workshop offers the same default styles and colors as Simple Viewer, but has options to change styles, colors, and visibility, and add labels to atoms and residues. Protein Workshop also supports molecular surfaces to aid in the display of quaternary structure, protein-protein interactions, and binding sites.

Web-Based Structure Viewing - Mount Holyoke College

Some simple web-based tools for exploring biological macromolecules. NCBI. In addition to the sequence databases curated by the National Library of Medicine, the National Center for Biotechnology Information develops and maintains 3D structural databases accessable through the NCBI web site:

RCSB PDB: Molecular Graphics Software Links

BioBlender Open Source viewer that includes features for morphing proteins and visualization of lipophilic and electrostatic potentials.; BRAGI A protein visualization and modeling program ; CCP4mg Create beautiful publication quality images and movies. Users can superpose and analyse structures as well. The program runs 'out of the box' on Linux, MacOSX and Windows platforms.

iCn3D: Web-based 3D Structure Viewer

To select residues that have hydrogen bonds with the current selection, please select the threshold of H-bonds.

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