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Clinical Genomic Database

Research.nhgri.nih.gov   DA: 22 PA: 5 MOZ Rank: 27

  • To help address this barrier, we constructed the Clinical Genomic Database (CGD), a manually curated database of conditions with known genetic causes, focusing on medically significant genetic data with available interventions
  • All conditions with identified genetic causes are …

Clinical Genomic Database

Research.nhgri.nih.gov   DA: 22 PA: 12 MOZ Rank: 35

  • Finding Reliable Health Information Online
  • Genetic & Genomic Science and Research
  • Genetic & Rare Diseases Information Center (GARD) Genetic Disorders, Genomics & Healthcare
  • For Health Professionals: Competency & Curricular Resources

Explore The Clinical Relevance Of Genes & Variants

Clinicalgenome.org   DA: 22 PA: 22 MOZ Rank: 46

  • ClinGen is defining the clinical relevance of genes and variants
  • ClinGen was founded in 2013 by the National Human Genome Research Institute, ClinGen is a growing collaborative effort, involving three grants, nine principal investigators and over 1,700 contributors from more than 40 countries.

Clinical Genomic Database

Research.nhgri.nih.gov   DA: 22 PA: 11 MOZ Rank: 36

  • Clinical Genomic Database Statistics The CGD currently includes a total of 4250 genes
  • Clicking on any of the numbers in the table below will return that particular subset of CGD entries by organ system within a category.

DECIPHER V11.7: Mapping The Clinical Genome

Deciphergenomics.org   DA: 24 PA: 24 MOZ Rank: 52

DECIPHER helps the clinical community share and compare human genome variants and phenotypes in a database of tens of thousands of patients worldwide

Clinical Genomic Database

Research.nhgri.nih.gov   DA: 22 PA: 14 MOZ Rank: 41

Download the Clinical Genomic Database Data All organ systems Download the complete CGD database in spreadsheet or text format: CGD.xls CGD.txt

The Clinical Genome (ClinGen) Resource

Genome.gov   DA: 14 PA: 50 MOZ Rank: 70

  • The Clinical Genome (ClinGen) Resource
  • ClinGen collects phenotypic and clinical information on variants across the genome, develops consensus approaches to identifying their clinical relevance, and disseminates this information to researchers and clinicians
  • The resource will advance genomics in clinical care and improve our understanding of

Get Started

Clinicalgenome.org   DA: 18 PA: 7 MOZ Rank: 32

  • The Clinical Genome Resource, or ClinGen, is a National Institutes of Health funded initiative to increase the community’s knowledge about the relationship between genes and health
  • We are dedicated to building a knowledge base that defines the clinical relevance of genes and variants for use in precision medicine and research.

Clinical Genomic Database PNAS

Pnas.org   DA: 12 PA: 20 MOZ Rank: 40

  • Solomon, Anh-Dao Nguyen, Kelly A
  • b Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892; and
  • c Department of Pediatrics, Walter Reed National Military Medical Center, Bethesda, MD

Clinical Genome Resource

Geisinger.edu   DA: 17 PA: 50 MOZ Rank: 76

Clinical Genome Resource ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to determining which genetic variants are most relevant to patient care by harnessing both research data and the data from the hundreds of thousands of clinical genetics tests being performed each year, as well as supporting expert curation of

ClinGen Genome Dosage Map

Dosage.clinicalgenome.org   DA: 25 PA: 25 MOZ Rank: 60

  • The Clinical Genome Resource (ClinGen) consortium is curating genes and regions of the genome to assess whether there is evidence to support that these genes/regions are dosage sensitive and should be targeted on a cytogenomic array.

Clinical Genomic Database:Public Domain And Reference

Research.nhgri.nih.gov   DA: 22 PA: 44 MOZ Rank: 77

  • Clinical Categorization of the CGD The CGD has been constructed to reflect the multisystemic nature of many genetic conditions in order to allow more comprehensive browsing by clinical categories
  • In the CGD, genes were first categorized into Manifestation categories, or the organ system(s) primarily affected by mutations in the corresponding gene.

Animal Models And Databases

Clinicalgenome.org   DA: 22 PA: 50 MOZ Rank: 84

  • The overall goal of the ClinGen Biocurator Working Group is to be a forum for education and training for all ClinGen biocurators
  • The Biocurator Educational Materials page provides links to videos of Biocurator Working Group calls on various topics, and links to additional useful websites and materials
  • We hope that you find these resources to

Databases And Gene Lists

Cancergenomics.org   DA: 22 PA: 29 MOZ Rank: 64

  • Compendium of Cancer Genome Aberrations
  • The CGC is developing the Compendium of Cancer Genome Aberrations (CCGA), a collaborative multi-institutional project to document and describe genomic aberrations in cancer as resource for day-to-day use in clinical reporting.The CCGA is a wiki database designed to host up-to-date and integrative molecular genetics and cytogenetic features of …

UCSC Genome Browser Home

Genome.ucsc.edu   DA: 15 PA: 15 MOZ Rank: 44

  • combine data sources from the Genome Browser database
  • Genome Browser in a Box (GBiB) run the Genome Browser on your laptop or server
  • rapidly align PCR primer pairs to the genome
  • convert genome coordinates between assemblies
  • import and view external data

ClinGen — The Clinical Genome Resource NEJM

Nejm.org   DA: 12 PA: 31 MOZ Rank: 58

  • ClinGen — The Clinical Genome Resource
  • Christa Lese Martin, Ph.D., On autopsy, a patient is found to have hypertrophic cardiomyopathy
  • The patient’s family pursues genetic

Home NCI Genomic Data Commons

Gdc.cancer.gov   DA: 14 PA: 14 MOZ Rank: 44

  • The NCI's Genomic Data Commons (GDC) provides the cancer research community with a unified repository and cancer knowledge base that enables data sharing across cancer genomic studies in support of precision medicine
  • The GDC supports several cancer genome programs at the NCI Center for Cancer Genomics (), including The Cancer Genome Atlas and Therapeutically Applicable …

Genome Explorer Free DNA Data Search Engine For All DNA

Sequencing.com   DA: 14 PA: 32 MOZ Rank: 63

  • Genome Explorer will list all data from your file so even if a rsid isn't available, we'll still show you data for that variant
  • A rsid is a unique identifier for a specific genetic variation
  • dbSNP is a public database from the US National Institutes of Health (NIH) that provides information on all known genetic variations.

Microbial Genomes

Ncbi.nlm.nih.gov   DA: 20 PA: 17 MOZ Rank: 55

  • Microbial Genomes resource presents public data from prokaryotic genome sequencing projects
  • Prokaryotes are the earliest forms of life, appearing on earth 4 billion years ago
  • The Prokaryotes include the Archaea, which include inhabitants of some of the most extreme environments on the planet, and the Bacteria, which include

SARS-CoV-2 Resources

Ncbi.nlm.nih.gov   DA: 20 PA: 12 MOZ Rank: 51

  • Find SARS-CoV-2 related resources at NCBI
  • Explore literature, identify clinical trials, and compounds used in them.

GeneDx Clinical Genomics Genetic Testing Rapid

Genedx.com   DA: 14 PA: 14 MOZ Rank: 48

  • Our unparalleled database, deep clinical knowledge, and mastery of variant interpretation allows us to turn data into diagnoses
  • Rapid exome and genome sequencing When timing is critical, a rapid diagnosis can shorten hospital stays, reduce healthcare costs and save lives.

The NCI Genomic Data Commons (GDC)

Cancer.gov   DA: 14 PA: 50 MOZ Rank: 85

  • The NCI Genomic Data Commons (GDC) is a unified knowledge base that promotes sharing of genomic and clinical data between researchers and facilitates precision medicine in oncology
  • Cancer is fundamentally a disease of the genome, caused by mutations and other harmful genomic changes that alter its function and contribute to the malignant behavior of cancer cells.

Advanced Search

Ncbi.nlm.nih.gov   DA: 20 PA: 21 MOZ Rank: 63

  • PubMed Clinical Queries; RefSeqGene; All Genetics & Medicine Resources Genomes & Maps
  • Database of Genomic Structural Variation (dbVar) GenBank: tbl2asn; Genome; Genome Project; Genome Data Viewer (GDV) Genome ProtMap; Genome Workbench; Influenza Virus; Nucleotide Database; PopSet; ProSplign; Sequence Read Archive (SRA) Splign; Trace Archive

Linked Data Hub UI

Ldh.clinicalgenome.org   DA: 22 PA: 8 MOZ Rank: 53

  • The ClinGen Linked Data Hub (LDH) facilitates efficient access to collated information such as links and select data from different data sources, which are made available using RESTful APIs
  • Currently, LDH focuses on linking information about human genes and variants to …

Research Areas: Cancer Genomics

Cancer.gov   DA: 14 PA: 24 MOZ Rank: 62

  • The wealth of data emerging from cancer genome studies increasingly will be integrated with patients’ medical histories and clinical data
  • These integrated results could be used to develop more tailored approaches to cancer diagnosis and treatment, as well as to improve methods of predicting cancer risk, prognosis, and response to treatment.

Clinical Genome Resource Berg Lab

Med.unc.edu   DA: 15 PA: 50 MOZ Rank: 90

Clinical Genome Resource ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to determining which genetic variants are most relevant to patient care by harnessing both research data and the data from the hundreds of thousands of clinical genetics tests being performed each year, as well as supporting expert curation of

The Cancer Genome Atlas

Cancer.gov   DA: 14 PA: 50 MOZ Rank: 90

  • The Cancer Genome Atlas (TCGA) collected many types of data for each of over 20,000 tumor and normal samples
  • Each step in the Genome Characterization Pipeline generated numerous data points, such as: clinical information (e.g., smoking status) molecular analyte metadata (e.g., sample portion weight)

Genomic Database

Sciencedirect.com   DA: 21 PA: 50 MOZ Rank: 98

  • Hutchins, in Genome Plasticity in Health and Disease, 2020 3.5 Application programming interfaces
  • The most powerful and flexible approach to searching genomic databases, but which requires programming experience, is via dedicated scripts incorporating commands that query Internet-based databases using APIs, allowing the creation of customized analytical pipelines (Table 4.3).

Databases And Web Tools For Cancer Genomics Study

Sciencedirect.com   DA: 21 PA: 38 MOZ Rank: 87

  • The database also has an ID conversion function that changes RefSeq or Ensembl IDs into NONCODE IDs
  • Recent advances in genome and related information technologies have accelerated the bridging of scientific research and clinical application, with the creation of publicly-accessible data repository and analytical tools.

Clinical Genome Data Model (cGDM) Provides Interactive

Nature.com   DA: 14 PA: 28 MOZ Rank: 71

Toward this goal, we aimed to develop a clinical genome data model allowing for enhanced interactive support in clinical decision-making, which minimises the possibility of misinterpretation at

Genomics And Medicine

Genome.gov   DA: 14 PA: 29 MOZ Rank: 73

  • Genomic medicine is an emerging medical discipline that involves using genomic information about an individual as part of their clinical care (e.g
  • for diagnostic or therapeutic decision-making) and the health outcomes and policy implications of that clinical use
  • Already, genomic medicine is making an impact in the

Human Gene Mutation Database (HGMD) Professional QIAGEN

Digitalinsights.qiagen.com   DA: 26 PA: 50 MOZ Rank: 19

  • HGMD Professional remains the largest, manually curated resource for finding disease-causing mutations
  • Founded and maintained by the Institute of Medical Genetics at Cardiff University, the database attempts to collate all known (published) gene lesions responsible for human inherited disease, giving you the best possible chance of reaching a

The ISCA Database

Dbsearch.clinicalgenome.org   DA: 27 PA: 27 MOZ Rank: 86

  • The ISCA Database Search has been archived
  • Please use dbVar’s nstd102 (Clinical Structural Variants) for information about structural variants with clinical

MendeLIMS: A Web-based Laboratory Information Management

Pubmed.ncbi.nlm.nih.gov   DA: 23 PA: 10 MOZ Rank: 66

  • Background: Large clinical genomics studies using next generation DNA sequencing require the ability to select and track samples from a large population of patients through many experimental steps
  • With the number of clinical genome sequencing studies increasing, it is critical to maintain adequate laboratory information management systems to manage the thousands of patient samples that are

Free Online Tutorials Teach Anyone How To Use Genome Databases

Genome.gov   DA: 14 PA: 50 MOZ Rank: 98

  • Free Online Tutorials Teach Anyone How to Use Genome Databases
  • Sequence data from numerous genomic projects are pouring out of the sequence centers and into public databases at an unprecedented rate
  • The sequencing projects flooding the free, online databases, such as the Entrez Genome Browser [ncbi.nlm.nih.gov], include the cancer tumor

About The GDC NCI Genomic Data Commons

Gdc.cancer.gov   DA: 14 PA: 10 MOZ Rank: 59

  • It is not just a database or a tool; it is an expandable knowledge network supporting the import and standardization of genomic and clinical data from cancer research programs
  • The GDC contains NCI-generated data from some of the largest and most comprehensive cancer genomic datasets, including The Cancer Genome Atlas (TCGA) and Therapeutically

GENIE NCI Genomic Data Commons

Gdc.cancer.gov   DA: 14 PA: 50 MOZ Rank: 100

  • The AACR Project Genomics Evidence Neoplasia Information Exchange (GENIE) is an international pan-cancer registry of real-world data assembled through data sharing between 19 leading international cancer centers with the goal of improving clinical decision-making
  • The registry leverages ongoing clinical sequencing efforts (CLIA/ISO-certified

NCBI Computational Biology Branch

Ncbi.nlm.nih.gov   DA: 20 PA: 10 MOZ Rank: 67

  • The research program in the Computational Biology Branch is carried out by Senior Investigators, tenure track Investigators, Staff Scientists, Postdoctoral Fellows, and students
  • The program focuses on theoretical, analytical and applied approaches to a …

ClinGen — The Clinical Genome Resource NEJM

Nejm.org   DA: 12 PA: 26 MOZ Rank: 76

  • ClinGen The Clinical Genome Resource
  • Christa Lese Martin, Ph.D., On autopsy, a patient is found to have hypertrophic cardiomyopathy
  • The patient’s family pursues genetic

The Stanford-Cancer Genome Atlas Portal

Genomeportal.stanford.edu   DA: 25 PA: 10 MOZ Rank: 74

  • For instance, clinical stage associated genes are the ones having different mutation profiles between different stages
  • If a gene is mutated across all stages, it is not regarded as associated with clinical stage
  • For further explanation, look at our publication
  • Navigate TCGA data 3 ways; Top panel: Search by -

JCGA: The Japanese Version Of The Cancer Genome Atlas And

Nature.com   DA: 14 PA: 28 MOZ Rank: 82

The database includes whole-exome sequencing data from 4907 surgically resected primary tumor samples obtained from 4753 Japanese patients with cancer and graphically provides genome information

The Cancer Genome Atlas Program

Cancer.gov   DA: 14 PA: 50 MOZ Rank: 9

  • The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types
  • This joint effort between NCI and the National Human Genome Research Institute began in 2006, bringing together researchers from diverse disciplines and multiple institutions.

The Cancer Genome Atlas (TCGA)

Genome.gov   DA: 14 PA: 45 MOZ Rank: 8

  • The Cancer Genome Atlas (TCGA) was a joint effort of the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI), which are both part of the National Institutes of Health, U.S
  • Department of Health and Human Services.

CBioPortal For Cancer Genomics

Cbioportal.org   DA: 18 PA: 18 MOZ Rank: 79

"You did a great service to the cancer research community and by that to the patients that donated the samples!."--Clinical pathologist, Karolinska University Hospital

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